van Hijum, Sacha: search on Z-Library

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1

Microbiome dynamics of human epidermis following skin barrier disruption

Patrick LJM Zeeuwen, Jos Boekhorst, Ellen H van den Bogaard, Heleen D de Koning, Peter MC van de Kerkhof, Delphine M Saulnier, Iris I van Swam, Sacha AFT van Hijum, Michiel Kleerebezem, Joost Schalkwi

Journal:

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

2

Correction for Quainoo et al., “Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis”

Quainoo, Scott, Coolen, Jordy P. M., van Hijum, Sacha A. F. T., Huynen, Martijn A., Melchers, Willem J. G., van Schaik, Willem, Wertheim, Heiman F. L.

Journal:

Clinical Microbiology Reviews

Year:

2018

Language:

english

File:

PDF, 97 KB

english, 2018

3

Characterization of the global impact of low temperature gas plasma on vegetative microorganisms

Theresa Winter, Jörn Winter, Martin Polak, Kathrin Kusch, Ulrike Mäder, Rabea Sietmann, Jörg Ehlbeck, Sacha van Hijum, Klaus-Dieter Weltmann, Michael Hecker, Harald Kusch

Journal:

Year:

2011

Language:

english

File:

PDF, 506 KB

english, 2011

4

SIMAGE:simulation of DNA-microarraygeneexpression data

Casper J Albers, Ritsert C Jansen, Jan Kok, Oscar P Kuipers, Sacha AFT van Hijum

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.06 MB

english, 2006

5

Comment on “Skin Microbiome Surveys Are Strongly Influenced by Experimental Design”

Zeeuwen, Patrick L.J.M., Boekhorst, Jos, Ederveen, Thomas H.A., Kleerebezem, Michiel, Schalkwijk, Joost, van Hijum, Sacha A.F.T., Timmerman, Harro M.

Journal:

The Journal of Investigative Dermatology

Year:

2016

Language:

english

File:

PDF, 411 KB

english, 2016

6

Comparative and functional genomics of lactococci

Jan Kok, Girbe Buist, Aldert L. Zomer, Sacha A.F.T. van Hijum, Oscar P. Kuipers

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 540 KB

english, 2005

7

Genome (re-)annotation and open-source annotation pipelines

Roland J. Siezen, Sacha A. F. T. Van Hijum

Journal:

Microbial Biotechnology

Year:

2010

Language:

english

File:

PDF, 563 KB

english, 2010

8

Multifactorial diversity sustains microbial community stability

Erkus, Oylum, de Jager, Victor CL, Spus, Maciej, van Alen-Boerrigter, Ingrid J, van Rijswijck, Irma MH, Hazelwood, Lucie, Janssen, Patrick WM, van Hijum, Sacha AFT, Kleerebezem, Michiel, Smid, Eddy J

Journal:

The ISME Journal

Year:

2013

Language:

english

File:

PDF, 2.09 MB

english, 2013

9

The post-vaccine microevolution of invasive Streptococcus pneumoniae

Cremers, Amelieke J. H., Mobegi, Fredrick M., de Jonge, Marien I., van Hijum, Sacha A. F. T., Meis, Jacques F., Hermans, Peter W. M., Ferwerda, Gerben, Bentley, Stephen D., Zomer, Aldert L.

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 781 KB

english, 2015

10

Diversity of acid stress resistant variants of Listeria monocytogenes and the potential role of ribosomal protein S21 encoded by rpsU

Metselaar, Karin I., den Besten, Heidy M. W., Boekhorst, Jos, van Hijum, Sacha A. F. T., Zwietering, Marcel H., Abee, Tjakko

Journal:

Frontiers in Microbiology

Year:

2015

Language:

english

File:

PDF, 1.67 MB

english, 2015

11

Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice

Rogier, Rebecca, Ederveen, Thomas H. A., Wopereis, Harm, Hartog, Anita, Boekhorst, Jos, van Hijum, Sacha A. F. T., Knol, Jan, Garssen, Johan, Walgreen, Birgitte, Helsen, Monique M., van der Kraan, Pet

Journal:

Year:

2019

Language:

english

File:

PDF, 1.51 MB

english, 2019

12

Deciphering the distance to antibiotic resistance for the pneumococcus using genome sequencing data

Mobegi, Fredrick M., Cremers, Amelieke J. H., de Jonge, Marien I., Bentley, Stephen D., van Hijum, Sacha A. F. T., Zomer, Aldert

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

13

Whole-Genome Sequencing of Bacterial Pathogens: the Future of Nosocomial Outbreak Analysis

Quainoo, Scott, Coolen, Jordy P. M., van Hijum, Sacha A. F. T., Huynen, Martijn A., Melchers, Willem J. G., van Schaik, Willem, Wertheim, Heiman F. L.

Journal:

Clinical Microbiology Reviews

Year:

2017

Language:

english

File:

PDF, 2.42 MB

english, 2017

14

Fractional Factorial Design for Optimization of the SELDI Protocol for Human Adipose Tissue Culture Media

Ewa Szalowska, Sacha A.F.T. Van Hijum, Han Roelofsen, Annemiek Hoek, Roel J. Vonk, Gerard J. te Meerman

Journal:

Biotechnology Progress

Year:

2007

Language:

english

File:

PDF, 254 KB

english, 2007

15

DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcription factor binding sites

Evert-Jan Blom, Sacha AFT van Hijum, Klaas J Hofstede, Remko Silvis, Jos BTM Roerdink, Oscar P Kuipers

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 1.45 MB

english, 2008

16

A novel scheme to assess factors involved in the reproducibility of DNA-microarray data

Sacha AFT van Hijum, Anne de Jong, Richard JS Baerends, Harma A Karsens…

Journal:

Year:

2005

Language:

english

File:

PDF, 750 KB

english, 2005

17

Transcriptomic signatures of peroxisome proliferator-activated receptor α (PPARα) in different mouse liver models identify novel aspects of its biology

Szalowska, Ewa, Tesfay, Haftu A, van Hijum, Sacha A F T, Kersten, Sander

Journal:

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

18

Use of propidium monoazide for selective profiling of viable microbial cells during Gouda cheese ripening

Erkus, Oylum, de Jager, Victor C.L., Geene, Renske T.C.M., van Alen-Boerrigter, Ingrid, Hazelwood, Lucie, van Hijum, Sacha A.F.T., Kleerebezem, Michiel, Smid, Eddy J.

Journal:

International Journal of Food Microbiology

Year:

2016

Language:

english

File:

PDF, 489 KB

english, 2016

19

Prosecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources

Evert Jan Blom, Rainer Breitling, Klaas Jan Hofstede, Jos BTM Roerdink, Sacha AFT van Hijum, Oscar P Kuipers

Journal:

Year:

2008

Language:

english

File:

PDF, 1.52 MB

english, 2008

20

Primary cilia–regulated transcriptome in the renal collecting duct

Mohammed, Sami G., Arjona, Francisco J., Verschuren, Eric H. J., Bakey, Zeineb, Alkema, Wynand, van Hijum, Sacha, Schmidts, Miriam, Bindels, René J. M., Hoenderop, Joost G. J.

Journal:

The FASEB Journal

Year:

2018

Language:

english

File:

PDF, 1.86 MB

english, 2018

21

Gut microbiome in ADHD and its relation to neural reward anticipation

Aarts, Esther, Ederveen, Thomas H. A., Naaijen, Jilly, Zwiers, Marcel P., Boekhorst, Jos, Timmerman, Harro M., Smeekens, Sanne P., Netea, Mihai G., Buitelaar, Jan K., Franke, Barbara, van Hijum, Sacha

Journal:

Year:

2017

Language:

english

File:

PDF, 14.05 MB

english, 2017

22

A predicted physicochemically distinct sub-proteome associated with the intracellular organelle of the anammox bacteriumKuenenia stuttgartiensis

Marnix H Medema, Miaomiao Zhou, Sacha AFT van Hijum, Jolein Gloerich, Hans JCT Wessels, Roland J Siezen, Marc Strous

Journal:

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

23

Draft Genome Sequences of 24 Lactococcus lactis Strains

Backus, Lennart, Wels, Michiel, Boekhorst, Jos, Dijkstra, Annereinou R., Beerthuyzen, Marke, Kelly, William J., Siezen, Roland J., van Hijum, Sacha A. F. T., Bachmann, Herwig

Journal:

Genome Announcements

Year:

2017

Language:

english

File:

PDF, 133 KB

english, 2017

24

Draft Genome Sequence of Lactobacillus delbrueckii subsp . bulgaricus LBB.B5

Urshev, Zoltan, Hajo, Karima, Lenoci, Leonardo, Bron, Peter A., Dijkstra, Annereinou, Alkema, Wynand, Wels, Michiel, Siezen, Roland J., Minkova, Svetlana, van Hijum, Sacha A. F. T.

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 152 KB

english, 2016

25

TLR-Induced IL-12 and CCL2 Production by Myeloid Cells Is Dependent on Adenosine A 3 Receptor–Mediated Signaling

van der Putten, Céline, Veth, Jennifer, Sukurova, Lejla, Zuiderwijk-Sick, Ella A., Simonetti, Elles, Koenen, Hans J. P .M., Burm, Saskia M., van Noort, Johannes M., IJzerman, Ad P., van Hijum, Sacha A

Journal:

The Journal of Immunology

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

26

Genome-scale diversity and niche adaptation analysis of Lactococcus lactis by comparative genome hybridization using multi-strain arrays

Roland J. Siezen, Jumamurat R. Bayjanov, Giovanna E. Felis, Marijke R. van der Sijde, Marjo Starrenburg, Douwe Molenaar, Michiel Wels, Sacha A. F. T. van Hijum, Johan E. T. van Hylckama Vlieg

Journal:

Microbial Biotechnology

Year:

2011

Language:

english

File:

PDF, 843 KB

english, 2011

27

Fermentation-induced variation in heat and oxidative stress phenotypes ofLactococcus lactisMG1363 reveals transcriptome signatures for robustness

Dijkstra, Annereinou R, Alkema, Wynand, Starrenburg, Marjo JC, Hugenholtz, Jeroen, van Hijum, Sacha AFT, Bron, Peter A

Journal:

Microbial Cell Factories

Year:

2014

Language:

english

File:

PDF, 533 KB

english, 2014

28

Prospects for improved control of dairy-relevant sporeformers using -omics technologies

Wells-Bennik, Marjon H.J., Driehuis, Frank, van Hijum, Sacha A.F.T.

Journal:

Current Opinion in Food Science

Year:

2016

Language:

english

File:

PDF, 257 KB

english, 2016

29

Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity

Wels, Michiel, Siezen, Roland, van Hijum, Sacha, Kelly, William J., Bachmann, Herwig

Journal:

Frontiers in Microbiology

Year:

2019

File:

PDF, 3.58 MB

2019

30

A generally applicable validation scheme for the assessment of factors involved in reproducibility and quality of DNA-microarray data

Sacha AFT van Hijum, Anne de Jong, Richard JS Baerends, Harma A Karsens, Naomi E Kramer, Rasmus Larsen, Chris D den Hengst, Casper J Albers, Jan Kok, Oscar P Kuipers

Journal:

Year:

2005

Language:

english

File:

PDF, 1.18 MB

english, 2005

31

Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses

Ederveen, Thomas H. A., Ferwerda, Gerben, Ahout, Inge M., Vissers, Marloes, de Groot, Ronald, Boekhorst, Jos, Timmerman, Harro M., Huynen, Martijn A., van Hijum, Sacha A. F. T., de Jonge, Marien I.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.18 MB

english, 2018

32

Genome-Wide Transcriptional Profiling of Clostridium perfringens SM101 during Sporulation Extends the Core of Putative Sporulation Genes and Genes Determining Spore Properties and Germination Characteristics

Xiao, Yinghua, van Hijum, Sacha A. F. T., Abee, Tjakko, Wells-Bennik, Marjon H. J., Zhou, Dongsheng

Journal:

Year:

2015

Language:

english

File:

PDF, 1.98 MB

english, 2015

33

Transcriptional response of Lactococcus lactis during bacterial emulsification

Tarazanova, Mariya, Huppertz, Thom, Starrenburg, Marjo, Todt, Tilman, van Hijum, Sacha, Kok, Jan, Bachmann, Herwig, Dague, Etienne

Journal:

Year:

2019

Language:

english

File:

PDF, 2.03 MB

english, 2019

34

Correction: Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice

Rogier, Rebecca, Ederveen, Thomas H. A., Wopereis, Harm, Hartog, Anita, Boekhorst, Jos, van Hijum, Sacha A. F. T., Knol, Jan, Garssen, Johan, Walgreen, Birgitte, Helsen, Monique M., van der Kraan, Pet

Journal:

Year:

2019

Language:

english

File:

PDF, 166 KB

english, 2019

35

Application of state-of-art sequencing technologies to indigenous food fermentations

van Hijum, Sacha AFT, Vaughan, Elaine E, Vogel, Rudi F

Journal:

Current Opinion in Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.31 MB

english, 2013

36

Screening metatranscriptomes for toxin genes as functional drivers of human colorectal cancer

Dutilh, Bas E., Backus, Lennart, van Hijum, Sacha A.F.T., Tjalsma, Harold

Journal:

Best Practice & Research Clinical Gastroenterology

Year:

2013

Language:

english

File:

PDF, 937 KB

english, 2013

37

Draft Genome Sequence of Streptococcus thermophilus C106, a Dairy Isolate from an Artisanal Cheese Produced in the Countryside of Ireland

Wels, Michiel, Serrano, L. Mariela, Eibrink, Beerd-Jan, Backus, Lennart, Bongers, Roger S., Vriesendorp, Bastienne, Siezen, Roland J., van Hijum, Sacha A. F. T., Meijer, Wilco C.

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 142 KB

english, 2015

38

Draft Genome Sequence of Lactobacillus plantarum SF2A35B

Bron, Peter A., Lee, I-Chiao, Backus, Lennart, van Hijum, Sacha A. F. T., Wels, Michiel, Kleerebezem, Michiel

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 139 KB

english, 2016

39

Purification of a novel fructosyltransferase from Lactobacillus reuteri strain 121 and characterization of the levan produced

Sacha A.F.T. van Hijum, Kees Bonting, Marc J.E.C. van der Maarel, Lubbert Dijkhuizen

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 212 KB

english, 2001

40

The adult nasopharyngeal microbiome as a determinant of pneumococcal acquisition

Cremers, Amelieke JH, Zomer, Aldert L, Gritzfeld, Jenna F, Ferwerda, Gerben, van Hijum, Sacha AFT, Ferreira, Daniela M, Shak, Joshua R, Klugman, Keith P, Boekhorst, Jos, Timmerman, Harro M, de Jonge,

Journal:

Year:

2014

Language:

english

File:

PDF, 1.14 MB

english, 2014

41

Resequencing of the Lactobacillus plantarum Strain WJL Genome

Martino, Maria Elena, Bayjanov, Jumamurat R., Joncour, Pauline, Hughes, Sandrine, Gillet, Benjamin, Kleerebezem, Michiel, Siezen, Roland, van Hijum, Sacha A. F. T., Leulier, François

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 150 KB

english, 2015

42

Comparative and functional genomics of lactococci

Jan Kok, Girbe Buist, Aldert L. Zomer, Sacha A.F.T. Van Hijum, Oscar P. Kuipers

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 540 KB

english, 2005

43

Purification of a novel fructosyltransferase from Lactobacillus reuteri strain 121 and characterization of the levan produced

Sacha A.F.T. van Hijum, Kees Bonting, Marc J.E.C. van der Maarel, Lubbert Dijkhuizen

Journal:

FEMS Microbiology Letters

Year:

2001

Language:

english

File:

PDF, 209 KB

english, 2001

44

From microbial gene essentiality to novel antimicrobial drug targets

Mobegi, Fredrick M, van Hijum, Sacha AFT, Burghout, Peter, Bootsma, Hester J, de Vries, Stefan PW, Jongh, Christa E, Simonetti, Elles, Langereis, Jeroen D, Hermans, Peter WM, de Jonge, Marien I, Zomer

Journal:

Year:

2014

Language:

english

File:

PDF, 576 KB

english, 2014

45

PhenoLink - a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching forLactobacillus plantarumstrains

Bayjanov, Jumamurat R, Molenaar, Douwe, Tzeneva, Vesela, Siezen, Roland J, van Hijum, Sacha A F T

Journal:

Year:

2012

Language:

english

File:

PDF, 296 KB

english, 2012

46

Genome Sequence of Lactobacillus pentosus KCA1: Vaginal Isolate from a Healthy Premenopausal Woman

Anukam, Kingsley C., Macklaim, Jean M., Gloor, Gregory B., Reid, Gregor, Boekhorst, Jos, Renckens, Bernadet, van Hijum, Sacha A. F. T., Siezen, Roland J., Planet, Paul J.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.83 MB

english, 2013

47

Comparative Genome Analysis of Lactococcus lactis Indicates Niche Adaptation and Resolves Genotype/Phenotype Disparity

Wels, Michiel, Siezen, Roland, van Hijum, Sacha, Kelly, William J., Bachmann, Herwig

Journal:

Frontiers in Microbiology

Year:

2019

Language:

english

File:

PDF, 3.58 MB

english, 2019

48

Saturation and Quantization Reduction in Microarray Experiments using Two Scans at Different Sensitivities

García de la Nava, Jorge, van Hijum, Sacha, Trelles, Oswaldo

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2004

Language:

english

File:

PDF, 407 KB

english, 2004

49

Genome-Wide Prediction and Validation of Sigma70 Promoters in Lactobacillus plantarum WCFS1

Todt, Tilman J., Wels, Michiel, Bongers, Roger S., Siezen, Roland S., van Hijum, Sacha A. F. T., Kleerebezem, Michiel, Song, Qing

Journal:

Year:

2012

Language:

english

File:

PDF, 346 KB

english, 2012

50

Draft Genome Sequence of Lactobacillus plantarum Lp90 Isolated from Wine

Lamontanara, Antonella, Caggianiello, Graziano, Orrù, Luigi, Capozzi, Vittorio, Michelotti, Vania, Bayjanov, Jumamurat R., Renckens, Bernadet, van Hijum, Sacha A. F. T., Cattivelli, Luigi, Spano, Gius

Journal:

Genome Announcements

Year:

2015

Language:

english

File:

PDF, 158 KB

english, 2015

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